Quick start

The main file of probNORM program is probnorm. To quickly run probNORM on provided example files type:

probnorm bam -t example/treated.sorted.bam -c example/control.sorted.bam -o output.txt

for BAM format input, and:

probnorm counts -i example/counts-input.txt -o output.txt

for count format input.

Important

This command will run probNORM with the default parameters.

probNORM allows for two format of input data: BAM file or custom made counts file. Depending on the input type, the additional options may vary.